Lecture Notes

In addition to downloadable lecture notes, audio files of each lecture are provided below. Media player software, such as Quicktime® Player, RealOne™ Player, or Windows Media® Player, is required to run the .mp3 files in this section.

These files are also available for download from iTunes®.

LEC # TOPICS
1 Intro 1: Computational Side of Computational Biology. Statistics; Perl, Mathematica (PDF);
(MP3-Part 1 - 14.1 MB) (MP3-Part 2 - 10.9 MB)
2 Intro 2: Biological Side of Computational Biology. Comparative Genomics, Models & Applications (PDF - 1.2 MB);
(MP3-Part  - 13.6 MB) (MP3-Part 2 - 10.9 MB)
3 DNA 1: Genome Sequencing, Polymorphisms, Populations, Statistics, Pharmacogenomics; Databases (PDF);
(MP3-Part 1 - 13.5 MB) (MP3-Part 2 - 10.6 MB)
4 DNA 2: Dynamic Programming, Blast, Multi-alignment, HiddenMarkovModels (PDF);
(MP3-Part 1 - 12.6 MB) (MP3-Part 2 - 11.4 MB)
5 RNA 1: Microarrays, Library Sequencing and Quantitation Concepts (PDF);
(MP3-Part 1 - 13.4 MB) (MP3-Part 2 - 11.7 MB)
6 RNA 2: Clustering by Gene or Condition and Other Regulon Data Sources Nucleic Acid Motifs; The Nature of Biological "proofs" (PDF);
(MP3-Part 1 - 12.9 MB) (MP3-Part 2 - 10 MB)
7 Protein 1: 3D Structural Genomics, Homology, Catalytic and Regulatory Dynamics, Function & Drug Design (PDF - 1.0 MB);
(MP3-Part 1 - 14.1 MB) (MP3-Part 2 - 9.7 MB)
8 Protein 2: Mass Spectrometry, Post-synthetic Modifications, Quantitation of Proteins, Metabolites, & Interactions (PDF);
(MP3-Part 1 - 13.2 MB) (MP3-Part 2 - 11.7 MB)
9 Networks 1: Systems Biology, Metabolic Kinetic & Flux Balance Optimization Methods (PDF);
(MP3 - 12.4 MB)
10 Networks 2: Molecular Computing, Self-assembly, Genetic Algorithms, Neural Networks (PDF);
(MP3-Part 1 - 10.6 MB) (MP3-Part 2 - 12.3 MB)
11 Networks 3: The Future of Computational Biology: Cellular, Developmental, Social, Ecological & Commercial Models (PDF);
(MP3-Part 1 - 14.1 MB) (MP3-Part 2 - 7.2 MB)



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